Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE118537

GEO first seen 2020

Temporal analysis of erythropoiesis

Organism
Homo sapiens
Samples
28
Type
Expression profiling by high...
Submitted
2018-08-14

CD34+ cells were subjected to ex vivo erythropoiesis according to the protocol described in Palii et al. (doi: 10.3791/2813. J Vis Exp. 53, 2011). Samples were harvested at different time points and analyzed by RNAseq.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Marjorie BrandTed Perkins
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Homo sapiens with unavailable instrument metadata (HTTP error), but exceptional quality (96.2% Q30, 50 bp read length, 0.004% N content). This dataset enables human transcriptomics with short-read high-throughput sequencing. The minimal contamination and consistent quality enable reliable differential expression analysis across samples.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 98.3 measured
pct q30 bases 96.2 measured
gc content pct 49.4 measured
mean read length 50 measured
mean base quality 35.9 measured
adapter content pct 0.02 measured
duplication rate pct 30.72 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 30.72 measured ×0.4 98%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0