Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE118785

GEO first seen 2019

H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes

Organism
Drosophila melanogaster; Homo sapiens; Mus musculus
Samples
43
Type
Genome binding/occupancy pro...
Submitted
2018-08-20

Enzymes catalyzing CpG methylation in DNA, including DNMT1 and DNMT3A/B, are indispensable for mammalian tissue development and homeostasis. They are also implicated in human developmental disorders and cancers, supporting a critical role of DNA methylation during cell fate specification and maintenance. Recent studies suggest that histone post-translational modifications (PTMs) are involved in specifying patterns of DNMT localization and DNA methylation at promoters and actively transcribed gen...

Provenance — who produced it, who reused it

Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Daniel N WeinbergSimon Papillon-CavanaghHaifen ChenXiao ChenKartik RajagopalanCynthia HorthYuan YueHamid NikbakhtDylan M MarchioneAshot HarutyunyanNada JabadoBenjamin A GarciaHaitao LiC D AllisJacek MajewskiChao Lu
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
methylation
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.003 measured
pct q20 bases 91.3 measured
pct q30 bases 80 measured
gc content pct 24.1 measured
mean read length 151 measured
mean base quality 35 measured
adapter content pct 0.57 measured
duplication rate pct 13.35 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published methylation thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80 measured ×1 50%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0