Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE118815

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Homo sapiens via HiSeq 4000 with exceptional quality (95.9% Q30, 0.001% N content) and confirmed GEO UID, spanning ~462M reads. This dataset enables robust human gene expression profiling with the high-throughput HiSeq 4000 platform. The superior base quality and substantial read count support sensitive transcript quantification and comprehensive differential expression analysis.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
18 / 18 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 138999570710 reported
total reads 461848615 reported
n content pct 0.001 measured
pct q20 bases 98.5 measured
pct q30 bases 95.9 measured
gc content pct 50.1 measured
mean read length 151 measured
mean base quality 36.3 measured
adapter content pct 26.84 measured
duplication rate pct 24.66 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%
mean base quality 36.3 measured ×0.6 100%
adapter content pct 26.84 measured ×0.4 0%
duplication rate pct 24.66 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0