GSE119454

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

riboCIRC: a comprehensive database of translatable circRNAs 2021 · 82 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Escherichia coli with unavailable sequencing platform (HTTP error), but exceptional quality (98% Q30, 35.4 bp read length, 0.001% N content). This dataset captures bacterial transcriptomics with minimal contamination. The short read length and exceptional quality suggest optimized bacterial library preparation for high-throughput multiplexing.

Data type / assay

bulk-RNA-seq

Organism

Escherichia coli

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 98.6 measured

pct q30 bases 98 measured

gc content pct 52.2 measured

mean read length 35.4 measured

mean base quality 34.9 measured

adapter content pct 0 measured

duplication rate pct 3.32 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%

mean base quality 34.9 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 3.32 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0