GSE119780

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

96 / 48 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 66186672600 reported

total reads 1323733452 reported

n content pct 0.015 measured

pct q20 bases 99.1 measured

pct q30 bases 97.2 measured

gc content pct 49 measured

mean read length 50 measured

mean base quality 39.4 measured

adapter content pct 0.01 measured

duplication rate pct 54.01 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.2 measured ×1 100%

mean base quality 39.4 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 54.01 measured ×0.4 47%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0