Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE120064

GEO first seen 2021

Single-cell mRNA sequencing of TAC-model mouse heart tissue

Organism
Mus musculus
Samples
16
Type
Expression profiling by high...
Submitted
2018-09-17

We studied the cell compositon of mouse heart by single-cell sequencing on TAC-model mice. Distint subgroups of cardiac muscle, fibroblast cell and endothelial cell were detected. We drawed a cell-cell interaction network using specific expressed ligands and receptors of cells. And we also observed the change of interaction and cell transformation with progress of the disease.

Provenance — who produced it, who reused it

Linked to 8 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Li WangPeng YuZongna RenZheng Li
Reused by

7 further papers cite this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.092 measured
pct q20 bases 95 measured
pct q30 bases 94 measured
gc content pct 42.2 measured
mean read length 25.8 measured
mean base quality 33.8 measured
adapter content pct 0 measured
duplication rate pct 22.03 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94 measured ×1 100%
mean base quality 33.8 measured ×0.6 97%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 22.03 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0