Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE120138

GEO first seen 2019

Association of cohesin subunits on chromosomes

Organism
Saccharomyces cerevisiae
Samples
16
Type
Genome binding/occupancy pro...
Submitted
2018-09-18

Characterisation of the effect of wpl1 and Eco1 on association of Cohesin subunits onto chromosomes in S. cerevisiae

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Christophe Chapard
Reused by

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Saccharomyces cerevisiae
Files available
BW
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 89 measured
pct q30 bases 5.4 measured
gc content pct 37.7 measured
mean read length 179.3 measured
mean base quality 24.7 measured
adapter content pct 0 measured
duplication rate pct 32.36 measured
supplementary file types BW reported
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 5.4 measured ×1 0%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 64