GSE120216

GEO first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

The transcription factor CBFB suppresses breast cancer through o... 2019 · 86 cites

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq of Homo sapiens with unavailable instrument details (HTTP error), but excellent quality (96.1% Q30, 126 bp read length, 17.84% adapter content) and confirmed GEO UID. This dataset enables human transcriptomics with long paired-end reads suited for isoform characterization. The notable adapter content suggests partial adapter trimming, requiring verification of preprocessing methods.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 98.2 measured

pct q30 bases 96.1 measured

gc content pct 49.3 measured

mean read length 126 measured

mean base quality 36.1 measured

adapter content pct 17.84 measured

duplication rate pct 21.39 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.1 measured ×1 100%

mean base quality 36.1 measured ×0.6 100%

adapter content pct 17.84 measured ×0.4 12%

duplication rate pct 21.39 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0