Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE120783

GEO

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (Homo sapiens) with A-grade score (98/100). High base quality (Q30 90.8%, mean 33.7), low duplication (31.6%), minimal adapter content (0.1%), and available supplementary files result in near-perfect marks. Minor deductions reflect conservative scoring; highly reusable for expression and isoform analysis.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Files available
TXT
Metrics (value · how obtained)
n content pct 0.002 measured
pct q20 bases 93.5 measured
pct q30 bases 90.8 measured
gc content pct 47.5 measured
mean read length 75 measured
mean base quality 33.7 measured
adapter content pct 0.1 measured
duplication rate pct 31.6 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.8 measured ×1 100%
mean base quality 33.7 measured ×0.6 95%
adapter content pct 0.1 measured ×0.4 100%
duplication rate pct 31.6 measured ×0.4 96%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 76