Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE122392

GEO first seen 2019

Sensitive, high-throughput single-cell RNA-Seq reveals within-clonal transcript-correlations in yeast populations

Organism
Saccharomyces cerevisiae
Samples
175
Type
Expression profiling by high...
Submitted
2018-11-09

Single-cell RNA-seq (scRNA-seq) has revealed extensive cellular heterogeneity within many organisms but few methods have been developed for microbial clonal populations. The yeast genome displays an unusually dense transcript spacing with interleaved and overlapping transcription from both strands, resulting in a minuscule but complex pool of RNA protected by a resilient cell wall. Here, we developed a sensitive, scalable and inexpensive yeast single-cell RNA-seq (yscRNA-seq) method that digital...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Mariona Nadal-RibellesSaiful IslamWu WeiPablo LatorreLars Steinmetz
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
175 / 175 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 13374956944 reported
total reads 215725112 reported
supplementary file types TAB reported
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently