Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE124364

GEO first seen 2019

miR205 Regulates Mammary Gland Development and Stem Cell Self-renewal through YAP and Wnt signaling

Organism
Mus musculus
Samples
4
Type
Expression profiling by high...
Submitted
2018-12-26

Mammary gland development is fueled by stem cell self-renewal and differentiation. External cues from the microenvironment coupled with internal cues such as post-transcriptional regulation exerted by miRNAs regulate stem cell behavior and stem cell fate. We have identified a miR205 regulatory network required for mammary gland morphogenesis and stem cell maintenance. In the postnatal mammary gland, miR205 is predominantly expressed in the basal/stem cell enriched population. Conditional deletio...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Yang LuZheng XiaWei LiJeffrey M Rosen
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk RNA-seq data from this experiment feature excellent quality metrics (98.1% Q30, 98.8% Q20) with 101 bp reads and minimal adapter contamination (0.47%), enabling reliable genomic mapping and transcript assembly. The read length is sufficient for both de novo and reference-guided transcriptome reconstruction, making it suitable for complex isoform studies and expression profiling.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.011 measured
pct q20 bases 98.8 measured
pct q30 bases 98.1 measured
gc content pct 45.4 measured
mean read length 101 measured
mean base quality 38.7 measured
adapter content pct 0.47 measured
duplication rate pct 21.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.1 measured ×1 100%
mean base quality 38.7 measured ×0.6 100%
adapter content pct 0.47 measured ×0.4 100%
duplication rate pct 21.93 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0