Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE124527

GEO first seen 2019

Global RNA expression profiles between shNC and shcircβ-catenin in PLC/PRF/5 cells

Organism
Homo sapiens
Samples
2
Type
Expression profiling by high...
Submitted
2019-01-01

Circular RNAs are a class of non-coding RNA transcripts, which are ubiquitously expressed in eukaryotes. In the current study, we identified a novel circRNA derived from β-catenin gene locus, which was named “circβ-catenin”. In order to characterize the function of circβ-catenin in modulating Wnt pathway, we conducted RNA-seq to evaluate the effect of circβ-catenin on global RNA expression profiles.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Weicheng LiangJinfang Zhang

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 2407543150 reported
total reads 48150863 reported
supplementary file types TXT reported
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently