Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE124742

GEO first seen 2023

Pancreas single cell patch-seq links physiologic dysfunction in diabetes to transcriptomic phenotypes

Organism
Homo sapiens
Samples
8,477
Type
Expression profiling by high...
Submitted
2019-01-07

Combined single-cell RNAseq and electrophysiological profiling of human pancreatic islet cells (pancreas patch-seq) to link transcriptomic phenotypes of islet cells to their physiologic properties.

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Joan Camunas-SolerXiaoqing DaiYan HangSeung K KimPatrick MacDonaldStephen R Quake
Reused by

6 further papers cite this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 95.1 measured
pct q30 bases 93.6 measured
gc content pct 48 measured
mean read length 75 measured
mean base quality 34.3 measured
adapter content pct 1.47 measured
duplication rate pct 52.69 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.6 measured ×1 100%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 1.47 measured ×0.4 100%
duplication rate pct 52.69 measured ×0.4 50%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0