Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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GSE124822

GEO first seen 2020

DNA methylation disruption reshapes the hematopoietic differentiation landscape

Organism
Homo sapiens; Mus musculus
Samples
540
Type
Expression profiling by high...
Submitted
2019-01-08

Somatic mutations in genes implicated in DNA methylation (DNAme; e.g., TET2, DNMT3A and IDH2), are frequently observed in hematological malignancies, as well as in clonal hematopoiesis (CH). Yet, how these mutations disrupt the hematopoietic differentiation topology remains largely unknown. By applying complementary single-cell sequencing approaches to murine bone marrow hematopoietic stem and progenitor cells, we observe that mutations in DNAme modifiers result in significantly altered differe...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Franco IzzoStanley LeeAsaf PoranRonan ChaligneFederico GaitiBaptiste GrossRekha MuraliSunil D DeochandChelston AngPhillipa A JonesAnna NamKyu-Tae KimSteven K HillRafael SchulmanMichelle KiPriscillia LhoumaudJane SkokAaron VinyRoss L LevineOmar Abdel-WahabKeningsberg EphraimDan A Landau
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently