Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE125014

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human bulk RNA-seq dataset shows exceptional quality (98.4% Q30, 99.5% Q20) with no adapter contamination, enabling high-confidence variant calling and allele-specific expression studies despite the shorter 51 bp read length. The short-read chemistry may limit isoform reconstruction but is adequate for gene-level quantification and differential expression analysis in human tissues.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.026 measured
pct q20 bases 99.5 measured
pct q30 bases 98.4 measured
gc content pct 49.9 measured
mean read length 51 measured
mean base quality 39.8 measured
adapter content pct 0 measured
duplication rate pct 31.54 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.4 measured ×1 100%
mean base quality 39.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 31.54 measured ×0.4 97%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0