Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE125780

GEO first seen 2019

DART-seq: an antibody-free method for global m6A detection

Organism
Homo sapiens
Samples
11
Type
Other
Submitted
2019-01-28

m6A is a widespread RNA modification which plays important roles in the regulation of gene expression. Methods for the global detection of m6A rely on immunoprecipitation of methylated transcripts using m6A antibodies. However, these methods are costly and require large amounts of input RNA, making them prohibitive for many experiments. Here, we describe DART-seq, an antibody-free method for m6A detection which enables transcriptome-wide mapping of m6A residues using low amounts of input materia...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Kate D Meyer

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human RNA-Seq with unavailable metadata shows moderate quality (96.3% Q30) and mean read length of 51 bp, indicating short-read sequencing. The missing experimental details prevent full assessment of platform and sample context.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.009 measured
pct q20 bases 98.8 measured
pct q30 bases 96.3 measured
gc content pct 49.5 measured
mean read length 51 measured
mean base quality 39.2 measured
adapter content pct 0.01 measured
duplication rate pct 30.19 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%
mean base quality 39.2 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 30.19 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0