Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE126139

GEO first seen 2019

Modular transcriptional programs separately define axon and dendrite connectivity

Organism
Drosophila melanogaster
Samples
2
Type
Expression profiling by high...
Submitted
2019-02-06

Patterns of synaptic connectivity are remarkably precise and complex. Single-cell RNA sequencing has revealed a vast transcriptional diversity of neurons. Nevertheless, a clear logic underlying the transcriptional control of neuronal connectivity has yet to emerge. Here, we focused on Drosophila T4/T5 neurons, a class of closely related neuronal subtypes with different wiring patterns. Eight subtypes of T4/T5 neurons are defined by combinations of two patterns of dendritic inputs and four patter...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Yerbol Z KurmangaliyevLawrence S Zipursky
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Drosophila melanogaster
Metrics (value · how obtained)
n content pct 0.034 measured
pct q20 bases 99.4 measured
pct q30 bases 97.9 measured
gc content pct 48.1 measured
mean read length 26 measured
mean base quality 39.1 measured
adapter content pct 0 measured
duplication rate pct 11.14 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%
mean base quality 39.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 11.14 measured ×0.4 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0