Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE126848

GEO first seen 2021

HEPATIC TRANSCRIPTOME SIGNATURES IN PATIENTS WITH VARYING DEGREES OF NON-ALCOHOLIC FATTY LIVER DISEASE COMPARED TO HEALTHY NORMAL-WEIGHT INDIVIDUALS

Organism
Homo sapiens
Samples
57
Type
Expression profiling by high...
Submitted
2019-02-21

Non-alcoholic fatty liver disease (NAFLD) represents a spectrum of conditions ranging from simple steatosis (NAFL), over non-alcoholic steatohepatitis (NASH) with or without fibrosis, to cirrhosis with end-stage disease. The hepatic molecular events underlying the development of NAFLD and transition to NASH are poorly understood. The present study aimed to determine hepatic transcriptome dynamics in patients with NAFL or NASH compared to healthy normal-weight and obese individuals. RNA sequencin...

Provenance — who produced it, who reused it

Linked to 35 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Kristoffer RigboltJens C Nielsen
Reused by

33 further papers cite this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
57 / 57 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 131270769942 reported
total reads 1757097312 reported
n content pct 0.201 measured
pct q20 bases 96.6 measured
pct q30 bases 95.1 measured
gc content pct 48.3 measured
mean read length 75.3 measured
mean base quality 34.6 measured
adapter content pct 0 measured
duplication rate pct 50.41 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
mean base quality 34.6 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 50.41 measured ×0.4 55%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0