Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE126868

GEO first seen 2019

Diverse Compounds from Pleuromutilin Lead to a Thioredoxin Inhibitor and Inducer of Ferroptosis

Organism
Homo sapiens
Samples
8
Type
Expression profiling by high...
Submitted
2019-02-21

The chemical diversification of natural products provides a robust and general method for creation of stereochemically rich and structurally diverse small molecules. The resulting compounds have physicochemical traits different from those in most screening collections, and as such are an excellent source for biological discovery. Herein, we subject the diterpene natural product pleuromutilin to reaction sequences focused on creating ring system diversity in few synthetic steps. This effort resul...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Evijola LlabaniRobert W HicklinHyang Y LeeStephen E MotikaLisa A CrawfordEranthie WeerapanaPaul J Hergenrother
Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Homo sapiens with unavailable platform metadata (HTTP error), but excellent quality (94.5% Q30, 144.3 bp read length, 0.004% N content) and confirmed GEO UID. This dataset supports human gene expression studies with extended read length enabling complex isoform detection. The consistent high quality and long reads favor isoform reconstruction pipelines.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 98 measured
pct q30 bases 94.5 measured
gc content pct 49.8 measured
mean read length 144.3 measured
mean base quality 39.1 measured
adapter content pct 0.01 measured
duplication rate pct 24.76 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%
mean base quality 39.1 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 24.76 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0