Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE128268

GEO first seen 2019

A Unique Epigenomic Landscape Defines Human Erythropoiesis (RNA-seq)

Organism
Homo sapiens
Samples
9
Type
Expression profiling by high...
Submitted
2019-03-13

Mammalian erythropoiesis yields a highly specialized cell type, the mature erythrocyte, evolved to meet organismal needs of increased oxygen carrying capacity. To better understand regulation of erythropoiesis, we performed genome-wide chromatin accessibility studies, DNA methylation studies, and transcriptome analyses and correlated this with genomic organization in highly purified populations of primary human erythroid cells across the stages of erythroid development and differentiation. Gene...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Vincent P SchulzHongxia YanKimberly Lezon-GeydaYelena MaksimovaXiuli AnJohn P HaleChristopher D HillyerNarla MohandasPatrick G Gallagher
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.138 measured
pct q20 bases 95 measured
pct q30 bases 91.4 measured
gc content pct 49.8 measured
mean read length 51 measured
mean base quality 36.4 measured
adapter content pct 0.02 measured
duplication rate pct 16.11 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.4 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0.02 measured ×0.4 100%
duplication rate pct 16.11 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0