Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE128671

GEO first seen 2020

Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters

Organism
Homo sapiens; Mus musculus
Samples
47
Type
Genome binding/occupancy pro...
Submitted
2019-03-21

Differential effect of PRC2 loss on gene repression in intestinal stem cells, transit amplifying cells, and differentiated villus cells in intestine is explained by disparity in the rate of cell division and resulting difference in H3K27me3 loss.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Unmesh JadhavElisa ManieriKodandaramireddy NalapareddyShariq MadhaShaon ChakrabartiKai WucherpfennigMegan BarefootRamesh A Shivdasani
Reused by

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.004 measured
pct q20 bases 97.2 measured
pct q30 bases 94 measured
gc content pct 46.1 measured
mean read length 150 measured
mean base quality 38.9 measured
adapter content pct 26.35 measured
duplication rate pct 9.25 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94 measured ×1 100%
QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0