Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE128767

GEO first seen 2019

RUNX1 safeguards the identity of the fetal ovary through an interplay with FOXL2

Organism
Mus musculus
Samples
4
Type
Genome binding/occupancy pro...
Submitted
2019-03-24

Sex determination of the gonads begins with fate specification of gonadal supporting cells into either ovarian granulosa cells or testicular Sertoli cells. This process of fate specification hinges on a balance of transcriptional control. We discovered that the transcription factor RUNX1 is enriched in the fetal ovary in rainbow trout, turtle, mouse, and human. In the mouse, RUNX1 marks the supporting cell lineage and becomes granulosa cell-specific as the gonads differentiate. RUNX1 plays compl...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Barbara NicolSara A GrimmEstelle LecluzeFrederic ChalmelMaëlle PannetierEric PailhouxElodie Dupin-De-BeyssatYann GuiguenBlanche CapelHumphrey H Yao
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 8686231725 reported
total reads 115816423 reported
supplementary file types BED, BIGWIG reported
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently