Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE129516

GEO first seen 2020

Landscape of intercellular crosstalk in fatty liver disease revealed by single-cell secretome analysis

Organism
Mus musculus
Samples
6
Type
Expression profiling by high...
Submitted
2019-04-09

Cell-cell communications via ligand-receptor signaling are a fundamental feature of complex organs. In addition to hepatocytes, the mammalian liver harbors several distinct cell types, including endothelial cells, hepatic stellate cells (HSC), cholangiocytes, the resident macrophage Kupffer cells, and other immune cells, collectively known as non-parenchymal cells (NPC) 1-5. Paracrine signaling among NPC is important for tissue homeostasis and has been implicated in the pathogenesis of nonalcoho...

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Xuelian XiongHenry KuangSahar AnsariTongyu LiuJiandie Lin
Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 4.084 measured
pct q20 bases 91.2 measured
pct q30 bases 82.3 measured
gc content pct 40.7 measured
mean read length 151 measured
mean base quality 35.1 measured
adapter content pct 0 measured
duplication rate pct 67.6 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.3 measured ×1 62%
mean base quality 35.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 67.6 measured ×0.4 16%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0