Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE129598

GEO first seen 2019

Common regulatory pathways mediate activity of microRNAs inducing cardiomyocyte proliferation

Organism
Rattus norvegicus
Samples
7
Type
Expression profiling by high...
Submitted
2019-04-10

Loss of functional cardiomyocytes is a major determinant of heart failure after myocardial infarction. Previous high throughput screening studies have identified a series of microRNAs that induce cardiomyocyte proliferation and stimulate cardiac regeneration after myocardial infarction. Here we investigate the mechanism of action of the top ten most effective of these miRNAs. Analysis of the transcriptional profile of miRNA-treated cardiomyocytes revealed an involvement of the Hippo-YAP pathway...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Consuelo TorriniMauro GiaccaDanilo Licastro
Reused by

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq of Rattus norvegicus (Norway rat) via HiSeq 2000 with good base quality (89.6% Q30, 0.056% N content) and confirmed GEO UID. This dataset enables gene expression profiling in a laboratory rodent model for neuroscience, behavioral, and disease research. The substantial read depth and confirmed platform enable reliable transcript quantification across experimental conditions.

Data type / assay
bulk-RNA-seq
Organism
Rattus norvegicus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
7 / 7 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 59179344640 reported
total reads 227612864 reported
n content pct 0.056 measured
pct q20 bases 94.1 measured
pct q30 bases 89.6 measured
gc content pct 44.1 measured
mean read length 130 measured
mean base quality 34.5 measured
adapter content pct 0 measured
duplication rate pct 42.27 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.6 measured ×1 98%
mean base quality 34.5 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 42.27 measured ×0.4 73%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0