Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE130064

GEO first seen 2020

DNA hypomethylation confers enhanced immunity against parasitic nematodes in plants

Organism
Oryza sativa
Samples
6
Type
Methylation profiling by hig...
Submitted
2019-04-19

Background: Epigenetic processes play an important role in the plant response to adverse environmental conditions. A role for DNA hypomethylation has recently been suggested in the pathogenic interaction between bacteria and plants, yet it remains unclear whether this phenomenon reflects a conserved and general plant immunity response. We therefore investigated the role of DNA methylation in the plant defence against damaging parasitic nematodes. Methods and results: Treatment of roots of rice (...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Mohammad Reza AtighiBruno VerstraetenTim De MeyerTina Kyndt
Reused by

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
methylation
Organism
Oryza sativa Japonica Group
Metrics (value · how obtained)
n content pct 0.014 measured
pct q20 bases 97.3 measured
pct q30 bases 95.8 measured
gc content pct 24.3 measured
mean read length 75.5 measured
mean base quality 34.8 measured
adapter content pct 0.02 measured
duplication rate pct 2.24 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published methylation thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.8 measured ×1 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0