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Expression data from primary colorectal cancers
Samples were taken from colorectal cancers in surgically resected specimens from 74 patients. The expression profiles were determined using Affymetrix Human Genome U133Plus 2.0 arrays. Our MSI/MSS classifer was applied to these samples.
Provenance — who produced it, who reused it
Linked to 32 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Oliver M Sieber
Reused by
- The consensus molecular subtypes of colorectal cancer 2015 · 5,246 cites
- Gene Expression Classification of Colon Cancer into Molecular Su... 2013 · 1,541 cites
- DeepCC: a novel deep learning-based framework for cancer molecul... 2019 · 234 cites
- Prognostic genome and transcriptome signatures in colorectal can... 2024 · 134 cites
- PreMSIm: An R package for predicting microsatellite instability... 2020 · 114 cites
- AKT-dependent NOTCH3 activation drives tumor progression in a mo... 2020 · 104 cites
- An integrative analysis reveals functional targets of GATA6 tran... 2013 · 81 cites
25 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
microarray-expr
Organism
Homo sapiens
Read type
not sequencing
Files available
CEL
Metrics (value · how obtained)
supplementary file types
CEL
reported
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently