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Thyroid hormone regulates distinct paths to maturation in pigment cell lineages
Early and post-embryonic neural crest-derived lineages in the zebrafish trunk in response to thyroid hormone modulation
Provenance — who produced it, who reused it
Linked to 5 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
L M SaundersD M ParichyC Trapnell
Reused by
4 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Danio rerio
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
14 / 14 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
92889470253
reported
total reads
1629639829
reported
supplementary file types
MTX, TSV
reported
QC cost
7 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently