Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE131685

GEO first seen 2020

Single-cell RNA sequencing of human kidney

Organism
Homo sapiens
Samples
3
Type
Expression profiling by high...
Submitted
2019-05-23

A comprehensive cellular anatomy of normal human kidney is crucial to address the cellular origins of renal disease and renal cancer. Some kidney diseases may be cell type-specific, especially renal tubular cells. To investigate the classification and transcriptomic information of human kidney, we performed a method to obtain single-cell suspension of kidney rapidly, and conducted single-cell RNA sequencing (scRNA-seq). We present scRNA-seq data of 23,366 high quality cells from human kidneys of...

Provenance — who produced it, who reused it

Linked to 21 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jinling LiaoZhenyuan YuYang ChenChunlin ZouHaiying ZhangJiwen ChengDeyun LiuTianyu LiQingyun ZhangZengnan Mo
Reused by

17 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
BAM/CRAM (aligned)
N numbers (samples, groups)
3 / 3 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok no reported
total bases 19478219548 reported
total reads 244422734 reported
supplementary file types MTX, TSV reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently