Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE131754

GEO first seen 2019

RNA sequencing of mouse hepatic response to lifespan-extending interventions

Organism
Mus musculus
Samples
78
Type
Expression profiling by high...
Submitted
2019-05-24

This dataset consists of hepatic gene expression profiles of mice subjected to 8 different lifespan-extending interventions, together with the corresponding age-, sex- and strain-matched littermate controls: caloric restriction (CR), methionine restriction (MR), growth hormone receptor knockout (GHRKO), Snell dwarf mice (Pit1 -/-), rapamycin, acarbose, 17-alpha-estradiol (17aE2) and Protandim. Both sexes and different age groups are presented within dataset. Using this data, we identified genera...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Alexander TyshkovskiyMaxim V GerashchenkoVadim N Gladyshev
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.009 measured
pct q20 bases 98.4 measured
pct q30 bases 97.4 measured
gc content pct 50.3 measured
mean read length 101 measured
mean base quality 38.5 measured
adapter content pct 0.39 measured
duplication rate pct 34.75 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.4 measured ×1 100%
mean base quality 38.5 measured ×0.6 100%
adapter content pct 0.39 measured ×0.4 100%
duplication rate pct 34.75 measured ×0.4 89%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0