Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE131873

GEO first seen 2019

Generating in vivo somatic mouse mosaics with locus-specific, stably-integrated transgenic elements for studies of gene function in development and tumorigenesis [scATAC-seq]

Organism
Mus musculus
Samples
2
Type
Genome binding/occupancy pro...
Submitted
2019-05-28

We report the development and efficiency of a new method to create somatic mosaicism in mice named as mosaic analysis by dual recombinase-mediated cassette exchange. Then we generate, as a proof of concept, a new model for pediatric glioma.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Gi B KimDavid Rincon-Fernandez-PachecoDavid SaxonAmy YangSara SabetMarina Dutra-ClarkeRachelle LevyAshley WatkinsHannah ParkAslam A AkhtarPaul LineschNaomi KobritzShea ChandraJessica MolinaDaniel GareauKendy HoangJerimiah TsyporinSerguei BannykhChintda SantiskulvongYizhou WangJie TangMario SuvaBin ChenMoise DanielpourJoshua J Breunig
Reused by

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ATAC-seq
Organism
Mus musculus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
BAM/CRAM (aligned)
N numbers (samples, groups)
2 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok no reported
total bases 28126653356 reported
total reads 429567138 reported
supplementary file types BED, MTX, TSV reported
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently