Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE131882

GEO first seen 2021

The Single Cell Transcriptomic Landscape of Early Human Diabetic Nephropathy

Organism
Homo sapiens
Samples
6
Type
Expression profiling by high...
Submitted
2019-05-29

We report the early transcriptional changes in human diabetic nephropathy by single nucleus RNA sequencing

Provenance — who produced it, who reused it

Linked to 20 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Parker C WilsonBenjamin D Humphreys
Reused by

16 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 / 6 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 284507308332 reported
total reads 2431686396 reported
n content pct 0.004 measured
pct q20 bases 99.1 measured
pct q30 bases 97.3 measured
gc content pct 50.8 measured
mean read length 26 measured
mean base quality 36.6 measured
adapter content pct 0 measured
duplication rate pct 17.24 measured
supplementary file types RDS reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 17.24 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0