Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE132040

GEO first seen 2020

Tabula Muris Senis: Bulk sequencing

Organism
Mus musculus
Samples
947
Type
Expression profiling by high...
Submitted
2019-05-31

Bulk RNA sequencing of 17 organs from Mus musculus across the organism's life span.

Provenance — who produced it, who reused it

Linked to 22 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Nick SchaumShayan HosseinzadehOliver HahnAngela O PiscoSpyros DarmanisTony Wyss-CorrayStephen R Quake
Ageing hallmarks exhibit organ-specific temporal signatures 2020
Reused by

19 further papers cite this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1,894 / 947 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 7958301387800.001 reported
total reads 39804021350 reported
n content pct 0.001 measured
pct q20 bases 98.9 measured
pct q30 bases 96.4 measured
gc content pct 48.8 measured
mean read length 100 measured
mean base quality 36.4 measured
adapter content pct 1.52 measured
duplication rate pct 91.35 measured
supplementary file types CSV reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.4 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 1.52 measured ×0.4 100%
duplication rate pct 91.35 measured ×0.4 0%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0