Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE133344

GEO first seen 2019

Exploring genetic interaction manifolds constructed from rich phenotypes

Organism
Homo sapiens
Samples
16
Type
Expression profiling by high...
Submitted
2019-06-26

Rich phenotyping using single-cell RNA sequencing reveals principles and mechanisms of genetic interactions.

Provenance — who produced it, who reused it

Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Thomas M NormanMax A HorlbeckLuke A GilbertJonathan S Weissman
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.003 measured
pct q20 bases 95.5 measured
pct q30 bases 90.5 measured
gc content pct 48.7 measured
mean read length 90 measured
mean base quality 35.2 measured
adapter content pct 0 measured
duplication rate pct 41.73 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.5 measured ×1 100%
mean base quality 35.2 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 41.73 measured ×0.4 74%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0