Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE133379

GEO first seen 2020

Detection of genomic G-quadruplexes in living cells using a small artificial protein

Organism
Gallus gallus; Homo sapiens; Mus musculus
Samples
18
Type
Genome binding/occupancy pro...
Submitted
2019-06-26

G-quadruplex (G4) structures formed by guanine-rich nucleic acids are implicated in essential physiological and pathological processes and serve as important drug targets. The genome-wide detection of G4s in living cells is important for exploring the functional role of G4s but has not yet been achieved due to the lack of a suitable G4 probe. Here we report an artificial 6.7 kDa G4 probe (G4P) protein that binds G4s with high affinity and specificity. We used it to capture G4s in living human, m...

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Ke-wei ZhengJia-yu ZhangYi-de HeJia-yuan GongCui-jiao WenJuan-nan ChenYu-hua HaoYong ZhaoZheng Tan
Reused by

6 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Homo sapiens; Mus musculus; Gallus gallus
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
18 / 18 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 400295718646 reported
total reads 1350696900 reported
supplementary file types BIGBED, BIGWIG, NARROWPEAK reported
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently