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Hi-C during mitotic release and G1 entry
DpnII Hi-C libraries for samples synchronized to G2/M using single 24h thymidine, 3h release, and 12h nocodazole--these samples are then released for x amount of time
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Kristin AbramoAnne-Laure ValtonSergey V VenevHakan OzadamA N FoxJob Dekker
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
chromatin-conformation
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
59 / 59 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
670126451000
reported
total reads
6701264510
reported
supplementary file types
COOL
reported
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently