GSE134651

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

A phase-separated nuclear GBPL circuit controls immunity in plan... 2021 · 168 cites

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Arabidopsis RNA-Seq with unavailable metadata shows good quality (92.8% Q30) and mean read length of 150 bp with high adapter content (25.49%), suggesting potential library contamination. Missing details prevent assessment.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 97 measured

pct q30 bases 92.8 measured

gc content pct 43.4 measured

mean read length 150 measured

mean base quality 38.5 measured

adapter content pct 25.49 measured

duplication rate pct 65.35 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%

mean base quality 38.5 measured ×0.6 100%

adapter content pct 25.49 measured ×0.4 0%

duplication rate pct 65.35 measured ×0.4 21%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0