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Provenance — who produced it, who reused it
Linked to 57 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
56 further papers cite this accession but reuse could not be confirmed.
Deep data QC
97/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
27 / 27 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
186097285400
reported
total reads
930486427
reported
n content pct
0.046
measured
pct q20 bases
98.5
measured
pct q30 bases
96.8
measured
gc content pct
48.3
measured
mean read length
100
measured
mean base quality
36.2
measured
adapter content pct
2.62
measured
duplication rate pct
36.31
measured
supplementary file types
TSV
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
96.8
measured
×1
100%
mean base quality
36.2
measured
×0.6
100%
adapter content pct
2.62
measured
×0.4
97%
duplication rate pct
36.31
measured
×0.4
86%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0