GSE135310

GEO first seen 2023

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Lipid-associated macrophages transition to an inflammatory state... 2023 · 119 cites

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.015 measured

pct q20 bases 99.3 measured

pct q30 bases 97.6 measured

gc content pct 47.8 measured

mean read length 28 measured

mean base quality 36.6 measured

adapter content pct 0 measured

duplication rate pct 39.21 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.6 measured ×1 100%

mean base quality 36.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 39.21 measured ×0.4 80%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0