GSE137897

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1,170 / 1,170 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 130960247732 reported

total reads 2670440340 reported

n content pct 0 measured

pct q20 bases 97.8 measured

pct q30 bases 93.6 measured

gc content pct 46 measured

mean read length 43 measured

mean base quality 36.5 measured

adapter content pct 0.04 measured

duplication rate pct 59.11 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.6 measured ×1 100%

mean base quality 36.5 measured ×0.6 100%

adapter content pct 0.04 measured ×0.4 100%

duplication rate pct 59.11 measured ×0.4 35%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0