Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE138266

GEO first seen 2021

Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis

Organism
Homo sapiens
Samples
22
Type
Expression profiling by high...
Submitted
2019-10-01

Cerebrospinal fluid (CSF) protects the central nervous system (CNS) and analyzing CSF aids the diagnosis of CNS diseases, but our understanding of CSF leukocytes remains superficial. Here, using single cell transcriptomics, we identified a specific border-associated composition and transcriptome of CSF leukocytes. Multiple sclerosis (MS) – an autoimmune disease of the CNS – increased transcriptional diversity in blood, but increased cell type diversity in CSF including a higher abundance of cyto...

Provenance — who produced it, who reused it

Linked to 15 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
David SchafflickMaike HartlenertAndreas Schulte-MecklenbeckTobias LautweinJolien WolbertGerd M Horste
Reused by

14 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
BAM/CRAM (aligned)
N numbers (samples, groups)
22 / 22 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok no reported
total bases 134391573927 reported
total reads 2357746911 reported
supplementary file types MTX, TSV reported
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently