Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE139218

GEO first seen 2019

Single-cell analysis uncovers that metabolic reprogramming is essential for cardiomyocyte proliferation in the regenerating heart.

Organism
Danio rerio
Samples
4
Type
Expression profiling by high...
Submitted
2019-10-21

While the heart regenerates poorly in mammals, efficient heart regeneration occurs in certain amphibian and fish species. Zebrafish has been used extensively to study heart regeneration, resulting in a model in which preexisting cardiomyocytes dedifferentiate and reinitiate proliferation to replace the lost myocardium. However, there is limited knowledge about the cellular processes that occur in this rare population of proliferating cardiomyocytes during heart regeneration. To identify such pro...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Hessel HonkoopDennis E de BakkerAlla AharonovFabian KruseAvraham ShakkedPhong D NguyenCecilia de HeusLaurence GarricMauro J MuraroAdam ShoffnerFederico TessadoriJoshua C PetersonWendy NoortAlberto BertozziGilbert WeidingerGeorge PosthumaDominic GrünWillem J van der LaarseJudith KlumpermanRichard T JaspersKenneth D PossAlexander van OudenaardenEldad TzahorJeroen Bakkers

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Danio rerio
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 27447955548 reported
total reads 221311260 reported
supplementary file types CSV, TSV reported
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently