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Provenance — who produced it, who reused it
Linked to 19 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
18 further papers cite this accession but reuse could not be confirmed.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
63 / 63 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2058932647084
reported
total reads
16604295541
reported
n content pct
0.002
measured
pct q20 bases
97.5
measured
pct q30 bases
95.9
measured
gc content pct
50.3
measured
mean read length
26
measured
mean base quality
34.3
measured
adapter content pct
0
measured
duplication rate pct
6.43
measured
supplementary file types
MTX, TSV
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95.9
measured
×1
100%
mean base quality
34.3
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
6.43
measured
×0.4
100%
QC cost
19 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0