Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE139369

GEO first seen 2019

Single-cell, multi-omic analysis identifies regulatory programs in mixed phenotype acute leukemia

Organism
Homo sapiens
Samples
38
Type
Genome binding/occupancy pro...
Submitted
2019-10-24

We present a single-cell framework that integrates highly multiplexed protein quantification, transcriptome profiling, and chromatin accessibility analysis. Using this approach, we establish a normal epigenetic baseline for healthy blood development, which we then use to deconvolve aberrant molecular features within blood from mixed-phenotype acute leukemia (MPAL) patients.

Provenance — who produced it, who reused it

Linked to 19 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Jeffrey M Granja
Reused by

16 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ATAC-seq
Organism
Homo sapiens
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
38 / 38 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 770160090649 reported
total reads 9622705204 reported
supplementary file types RDS, TSV reported
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently