GSE140885

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Gut microbiota regulate tumor metastasis via circRNA/miRNA netwo... 2020 · 130 cites

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This mouse RNA-Seq with unavailable details shows high quality (93.5% Q30) and unusually long mean read length of 150 bp. The missing metadata prevents platform identification.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 97.7 measured

pct q30 bases 93.5 measured

gc content pct 48.1 measured

mean read length 150 measured

mean base quality 38.7 measured

adapter content pct 19.45 measured

duplication rate pct 29.05 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.5 measured ×1 100%

mean base quality 38.7 measured ×0.6 100%

adapter content pct 19.45 measured ×0.4 3%

duplication rate pct 29.05 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0