GSE142068

GEO

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from mouse using NextSeq 500. Grade A (98/100) with Q30 at 90.4% and minimal adapter content (0.37%). Mean base quality of 33.6 (scored 93/100) and duplication of 32.06% (scored 95/100) are the only minor softness in an otherwise robust dataset; highly recommended for reuse.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

868 / 868 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 188888439043 reported

total reads 2487966963 reported

n content pct 0 measured

pct q20 bases 93.1 measured

pct q30 bases 90.4 measured

gc content pct 41.2 measured

mean read length 76 measured

mean base quality 33.6 measured

adapter content pct 0.37 measured

duplication rate pct 32.06 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.4 measured ×1 100%

mean base quality 33.6 measured ×0.6 93%

adapter content pct 0.37 measured ×0.4 100%

duplication rate pct 32.06 measured ×0.4 95%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0