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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- Metatranscriptomic analysis to define the Secrebiome, and 16S rR... 2020 · 148 cites
Deep data QC
86/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
What this means
claude:haiku This human RNA-Seq from HiSeq 2000 totals 10.3 billion bases with good quality (91.7% Q30). The dataset enables gene expression profiling in human samples.
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 / 8 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
10335052971
reported
total reads
55007120
reported
n content pct
0.001
measured
pct q20 bases
94.7
measured
pct q30 bases
91.7
measured
gc content pct
44
measured
mean read length
65.4
measured
mean base quality
34.1
measured
adapter content pct
0.01
measured
duplication rate pct
66.64
measured
supplementary file types
FASTA, TXT
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
91.7
measured
×1
100%
mean base quality
34.1
measured
×0.6
100%
adapter content pct
0.01
measured
×0.4
100%
duplication rate pct
66.64
measured
×0.4
19%
QC cost
19 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0