Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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GSE143519

GEO first seen 2020

Heterochromatin-driven nuclear softening protects the genome against mechanical stress-induced damage

Organism
Homo sapiens
Samples
17
Type
Expression profiling by high...
Submitted
2020-01-13

RNA and H3K9me3 ChIP sequencing data of normal human neonatal keratinocytes subjected to 40% uniaxial cyclic stretch

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Sara Wickström

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human RNA-Seq with unavailable details shows high quality (96.5% Q30) and mean read length of 99.1 bp. Missing metadata prevents platform identification.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.006 measured
pct q20 bases 98.9 measured
pct q30 bases 96.5 measured
gc content pct 52.5 measured
mean read length 99.1 measured
mean base quality 36.4 measured
adapter content pct 0 measured
duplication rate pct 53.19 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 53.19 measured ×0.4 49%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0