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GSE143955

GEO first seen 2020

RNAseq profiling of skin samples from wild type and RIPK1E-KO mice

Organism
Mus musculus
Samples
25
Type
Expression profiling by high...
Submitted
2020-01-20

Keratinocyte-specific RIPK1 deficiency causes skin inflammation due to ZBP1-induced necroptosis. RNA-Seq analysis of the skin from wild type and RIK1E-KO mice was performed to examine how RIPK1 deficiency affects the expression of mRNAs as well as endogenous retroelement-derived transcripts.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Snehlata KumariHuipeng JiaoLaurens WachsmuthGeorge KassiotisManolis Pasparakis

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
25 / 25 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 289177768412 reported
total reads 1643621040 reported
supplementary file types CSV reported
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently