GSE144240

Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma

Organism

Homo sapiens

Samples

105

Type

Expression profiling by high...

Submitted

2020-01-24

This SuperSeries is composed of the SubSeries listed below.

Provenance — who produced it, who reused it

Linked to 19 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by

Multimodal Analysis of Composition and Spatial Architecture in H... 2020

Reused by

Spatial deconvolution of HER2-positive breast cancer delineates... 2021 · 403 cites
Knowledge-graph-based cell-cell communication inference for spat... 2022 · 212 cites
Evaluation of cell-cell interaction methods by integrating singl... 2022 · 157 cites
STRIDE: accurately decomposing and integrating spatial transcrip... 2022 · 121 cites
Deciphering tumor ecosystems at super resolution from spatial tr... 2023 · 94 cites

13 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Files available

JPG, TSV

Metrics (value · how obtained)

supplementary file types JPG, TSV reported

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently