Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE144250

GEO first seen 2020

The Ccr4-Not complex monitors the translating ribosome for codon optimality

Organism
Saccharomyces cerevisiae
Samples
4
Type
Other
Submitted
2020-01-24

Control of messenger RNA (mRNA) decay rate is intimately connected to translation elongation, but the spatial coordination of these events is poorly understood. The Ccr4-Not complex initiates mRNA decay through deadenylation and activation of decapping. We used a combination of cryo–electron microscopy, ribosome profiling, and mRNA stability assays to examine the recruitment of Ccr4-Not to the ribosome via specific interaction of the Not5 subunit with the ribosomal E-site in Saccharomyces cerevi...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Robert BuschauerYoshitaka MatsuoTakato SugiyamaYing H ChenNajwa AlhusainiThomas SweetKen IkeuchiJingdong ChengYasuko MatsukiRisa NobutaAndrea GilmozziOtto BerninghausenPetr TesinaThomas BeckerJeff CollerToshifumi InadaRoland Beckmann

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
Saccharomyces cerevisiae

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently